Simon Lab

 

Murawski, A.M., Nieves, J.L., Chattopadhyay, M., Young, M.Y., Szarko, C., Tajalli, H.F., Azada, T., Jean-Jacques, N.B., Simon, A.E., and Kushner, D.B.  2015.  Rapid evolution of in vivo-selected sequences and structures replacing 20% of a subviral RNA.  Virology 483, 149–162.

 

Guo, R., Lin, W., Zhang, J., Simon, A. E., and Kushner, D. B.  2009.  Structural plasticity and rapid evolution in a viral RNA revealed by in vivo genetic selection.  J. Virol. 83, 927-939.

 

Guo, R., Meskauskas, A., Dinman, J.D., and Simon, A.E.  2011.  Evolution of a helper virus-derived ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus.  Virology 419, 10-16.

 

Sun, X., Zhang, G., and Simon, A. E. 2005.  Short internal sequences involved in RNA replication and virion accumulation in a subviral RNA of Turnip crinkle virus. J. Virol. 79, 512-524.

 

Carpenter, C.D. and Simon, A. E. 1998. Analysis of sequences and predicted structures required for viral satellite RNA accumulation by in vivo genetic selection Nucleic Acids Research, 26, 2426 - 2432

 

Kong, Q., Oh, J.-W., and Simon, A. E.   1995.  Symptom attenuation by a normally virulent satellite RNA of turnip crinkle virus is associated with the coat protein open reading frame.  Plant Cell  7, 1625-1634.  PMid: 9750054

 

Oh, J.-W., Kong, Q., Song, C., Carpenter, C. D., and Simon, A. E.   1995.  Open reading frames of turnip crinkle virus involved in satellite symptom expression and incompatibility with Arabidopsis thaliana ecotype Dijon.  Mol. Plant-Microbe Interact. 8, 979-987.  PMid: 8664506

 

Song, C., and Simon, A. E.  1995.  Synthesis of novel products in vitro by an RNA-dependent RNA polymerase.  J. Virol. 69. 4020-4028.

 

Carpenter, C.D., Oh, J.-W., Zhang, C., and Simon, A. E.  1995.  Involvement of a stem-loop structure in the location of junction sites in viral RNA recombination.  J. Mol. Biol. 245, 608-622. PMid: 7844830

 

Zhang, C., and Simon, A. E.   1994.  Effect of template size on replication of defective interfering RNAs.  J. Virol. 68, 8466-8469.  PMid: 7966644

 

Song, C., and Simon, A.E. 1994. RNA-dependent RNA polymerase from plants infected with turnip crinkle virus can transcribe (+)- and (-)-strands of virus-associated RNAs. Proc. Natl. Acad Sci.USA. 91, 8792-8796.

 

Carpenter, C.D. and Simon, A.E.   1994. Recombination between plus and minus strands of turnip crinkle virus.  Virology 201, 419-423.  PMid: 8184554

 

Carpenter, C.D., Kreps, J.A., and Simon, A.E.  1994.  Genes encoding glycine-rich Arabidopsis thaliana proteins with RNA-binding motifs are influenced by cold treatment and an endogenous circadian rhythm. Plant Physiol. 104, 1015-1025.  PMid: 7513083

 

Cascone, P.J.,  Haydar, T. and Simon, A.E.  1993.  Sequences and structures required for RNA recombination between virus-associated RNAs  Science 260, 801-805. PMid: 8484119

 

Simon, A.E., Li, X.H., Lew, J., Stange, R., Zhang, C. Polacco, M., and Carpenter, C.D.   1992. Susceptibility and resistance of Arabidopsis thaliana to turnip crinkle virus.  Mol. Plant-Microbe Interact. 5 , 496-503.

 

Zhang, C., Cascone, P.J. and Simon, A.E.  1991. Recombination between satellite and genomic RNAs of turnip crinkle virus.  Virology 184, 791-794. PMid: 1716029

 

Li, X. H. and Simon, A. E.  1991. In vivo accumulation of a turnip crinkle virus DI RNA is affected by alterations in size and sequence.  J. Virol. 65, 4582-4590.  PMC248912

 

Carpenter, C.D., Cascone, P.J., and Simon, A.E.  1991.  Mutations in a satellite RNA of turnip crinkle virus result in addition of poly(\(\(\(U) in vivo.  Virology 183, 595-601. PMid: 1713000

 

Carpenter, C.D., Cascone, P.J., and Simon, A.E.    1991. Formation of multimers of linear satellite RNAs.   Virology 183, 586-594. PMid: 1712999

 

Cascone, P.J., Carpenter, D.C., Li, X.H. and Simon, A.E.   1990. Recombination between satellite RNAs of turnip crinkle virus.  EMBO J.  9, 1709-1715.  PMid: 1693330

 

Li, X.H. and  Simon, A.E.   1990.   Symptom intensification on cruciferous hosts by the virulent sat-RNA of turnip crinkle virus.   Phytopathology 80 238-242.

 

Li, X.H., Heaton, L.,  Morris, T.J. and Simon, A.E.  1989.  Defective interfering RNAs of turnip crinkle virus intensify viral symptoms and are generated de novo.  Proc. Natl. Acad. Sci. USA  86, 9173-9177.  PMid: 2594759

 

Simon, A.E., Engel, H.,  Johnson, R., and  Howell, S.H.   1988. Identification of determinants affecting virulence, RNA processing and infectivity in the virulent satellite of turnip crinkle virus. EMBO J. 7, 2645-2651.  PMid: 3181135

 

Simon, A.E. and Howell, S.H.  1987.   Synthesis in vitro of infectious RNA copies of the virulent satellite of turnip crinkle virus.   Virology 156, 146-152.  PMid: 3811230

 

Simon, A.E. and Howell, S.H.  1986.   The virulent satellite RNA of turnip crinkle virus has a major domain homologous to the 3'-end of the helper virus genome.  EMBO J. 5, 3423-3428.  PMid: 16453740